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PangenomeTIGR4
serotype 4
D39serotype 2
D39Vserotype 2
Hungary19A-6serotype 19A
EF3030serotype 19F
670-6Bserotype 6B
6A-10serotype 6A
70585serotype 5
A026serotype 19F
A66serotype 3
AP200serotype 11A
ASP0581serotype 12F
ATCC 49619serotype 19F
ATCC 700669serotype 23F
BVJ1JLserotype 1
CGSP14serotype 14
G54serotype 19F
HU-OHserotype 3
Hu15serotype 19A
Hu17serotype 19A
INV104serotype 1
INV200serotype 14
JJAserotype 14
MDRSPN001serotype 19F
NCTC7466serotype 2
NU83127serotype 4
OXC141serotype 3
P1031serotype 1
R6serotype 2
SP49serotype 19A
SPN032672serotype 1
SPN034156serotype 3
SPN034183serotype 3
SPN994038serotype 3
SPN994039serotype 3
SPNA45serotype 3
ST556serotype 19F
TCH8431/19Aserotype 19A
Taiwan19F-14serotype 19F
Xen35serotype 4
gamPNI0373serotype 1
NCBI: 27-FEB-2015
⊟Summary[edit | edit source]
- organism: Streptococcus pneumoniae SPNA45
- locus tag: SPNA45_01005 [new locus tag: SPNA45_RS05645 ]
- pan locus tag?: PNEUPAN001606000
- symbol: zmpB
- pan gene symbol?: zmpB
- synonym:
- product: Zinc metalloprotease B (pseudogene)
⊟Genome View[edit | edit source]
⊟Gene[edit | edit source]
⊟General[edit | edit source]
- type: CDS, pseudogene
- locus tag: SPNA45_01005 [new locus tag: SPNA45_RS05645 ]
- symbol: zmpB
- product: Zinc metalloprotease B (pseudogene)
- replicon: chromosome
- strand: +
- coordinates: join(998821..1001310,1001315..1003780)
- length: 4956
- essential: unknown
⊟Accession numbers[edit | edit source]
- Location: HE983624 join(998821..1001310,1001315..1003780) NCBI
- BioCyc: see SPNA45_RS05645
- MicrobesOnline:
- PneumoBrowse for strain D39V: SPV_0577 PneumoBrowse
⊟Phenotype[edit | edit source]
Share your knowledge and add information here. [edit]
⊟DNA sequence[edit | edit source]
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4921ATGGCTCCTTCTGTAGTGGACGCAGCCACCTATCACTATGTAAATAAAGAGATTATTTCA
CAAGAAGCTAAAGATTTAATTCAGACAGGAAAGCCTGACAGGAATGAAGTTGTATATGGT
TTGGTGTATCAAAAAGATCAGTTGCCTCAAACAGGGACAGAAGCATCTGTTTTGACAGCT
TTTGGTTTGCTGACTGTTGGGAGCTTGCTTTTAATCTACAAGAGAAAGAAAATTGCTAGC
GTCTTTCTAGTTGGAGCTATGGGATTGGTAGTTCTTCCTAGTGCAGGGGCTGTAGACCCA
GTTGCGACCCTAGCGCTGGCTAGTCGAGAGGGTGTTGTTGAAATGGATGGCTATCGCTAT
GTTGGTTATCTATCAGGTGACATCCTCAAAACGCTTGGCTTGGACACTGTTTTAGAAGAA
ACCTCAGCAAAACCTGGAGAGGTGACTGTAGTCGAAGTTGAGACTCCTCAATCAACAACA
AATCAGGAGCAAGCTAGGACAGAAAACCAAGTAGTAGAGACAGAGGAAGCTCCAAAAGAA
GAAGCACCTAAAACAGAAGAAAGTCCAAAGGAAGAACCAAAATCGGAGGTAAAACCTACT
GACGACACCCTTCCTAAAGTAGAAGAGGGGAAAGAAGATTCAGTAGAATCAGCTCCAGTT
GAAGAAGTAAGTGGAGCAGTTGATTCAAAAACAGATGAACAAGCACCAGTCAAGCCAGAA
AGTCAACCATCAGATAAACAAGCTGAGGAGCCAAACGTTGAACCACCAGTAGAACAACCA
AAAGTGGAAACGCCTGCTGTAGAAAAACAAACGGAACCAACAGAGGAACCAAAAGTTGAA
GTAACAAGTATTCCCCAAACTACTCGCTATGAGGAAGACCTTACTAAGGAACACGGAACG
CGTGAAGTTGTTAAGGAAGGTAAGAATGGCAGTAGAACAGTTACTACTCCATATATCTTG
AATGCGACAGATGGTACGACTACAGAAGGCACTTCGACAACTGATGAAGCTGAGATGGAG
AAAGAGGTTGTTCGTGTTGGCACGAAACCCAAAGAAAAATTAGCTCCAGTCTTAAGTTTG
ACAAGTGTTACAGATAATGCAATGTTGCGTAGTGCGAGACTTACTTATCATTTGGAAAAT
ACAGACAGTGTTGATGTGAAAAAAATTCATGCTGAAATTAAAAATGGCGATAAGGTTGTC
AAAACTATTGACTTATCTAAAGAGAGATTATCAGATGCTGTTGACGGTCTTGAACTTTAT
AAAGATTATAAGATTGTGACGAGTATGACCTATGATAGAGGTAATGGTGAAGAAACCTCT
ACGTTGGAAGAAACTCCACTACGATTAGACCTCAAGAAGGTTGAATTGAAAAACATCGGC
TCTACTAATCTCGTCAAAGTAAATGAGGATGGTACTGAGGTGGCAAGTGACTTCTTAACA
AGTAAACCTGTGGATGTGCAGAATTACTACCTCAAAGTAACTTCACGTGATAATAAAGTG
TTTCGCCTCACAGTTGAAAAAATTGAAGAGGTGACTGAGGAAGGTCAACCACTTTACAAA
GTCACTGCTAAGGCTCCTAATTTGATTCAGCACACGGATGCGACTAAAATGCAAGACGAA
TACGTGTATTATATTGAAAAAACACGTGCAACAGATGGTGATATTTACTACAACTTTAAC
GACTTAGTAAACGCCATGAACAAAAACAAAACTGGTACATTCAAACTTGGTGCTGATTTG
AACGCTACAGGTGTACCGACACCTGCTAAGTCGTATGTTACAGGTGATTTCCGAGGTACT
TTGACAAGTGTTGATGGTGAACATTACACAATTCATAATACAAGTCGCCCATTGTTTAAT
AATATTATAGGTGGGACTATCAAAGATATTAACCTTGGCAATGTTAATATTCACATGCCA
TGGGCAAATAACGTTGCATCGTTAGCTAATATTATTAAAGGTGGAACCACTATTGAAAAT
GTCAAAGTTACAGGTAATGTTCTTGGTAAAGACTGGGTATCTGGATTTATAGATAAAATA
GATAGTGGCGGTACATTGAGAAATGTAGCTTTTATTGGGAATGTGACCTCTGTTGGTACA
GGTGGTTCGTTCTTGACTGGTATTGTTGGTGAAAACTGGAAGGGACTGGTAGAACAGACT
TATGTAGATGCCAATATTCGAGGGAAGAAAGCTAAGGCTGCAGGTATAGCTTACTGGTCG
CAAAATGGAGGCGATAACTATGCTGTAGGTAGATATGGAGCAATTAAGAAATCTGTCGTT
AAAGGTTCAATAGATGTAGAAAAACCAATTGAAGTTGGTGGCGCTATTGGAAGTTTAAAT
TATCTTGGTTATATAGAAGACACTGTTGCTATGATGAAAGTTAAGAACGGTGAAATTTTC
TACGGTTCGCATGATATCGATACCGATCCATATTACACAGGAGAACGAGTAAATAGAAAT
TTCATTGTTGACGGTGTACAAAGCAGACCGCTTGCTTATCGTAATATCGAAAAACTTCAA
CCATTCTACAATAAAGAGTGGATTGTAGACCAAGGTAATAAAGTTCCATCAAATTCTAAA
TTATTAACTACAGAAGTATTATCTGTTACAGGTATGAAAGATGGTCAATTTGTGACTGAC
TTATCAGAAATTGATAAAATTATGATTCACTATGCGGATGGCACCAAAGAAGAAATGAAC
GTGACAGCGGTTGCTGATTCTAAGGTGAAACAAGTTCGTGAGTATGACGTGACTGATTTG
GGTGTTGTTTACACTCCGAATATGGTTGATAAAAACCGCGACCAATTGATTGCAGATGTG
AAAGCGAAATTGTCGTCAGTTGAATTGATTTCCCCTGAAGTTCGTGCTCTTATGGATAAA
CGTGGTAAAGCTGAAGAAAATACGGAAGGTCGTCAAAATGGATACATTAGAGATCTATTC
CTTGAAGAAAGCTTTGCTGAAGTGAAAGCTGGTTTGGGTAAATTGGTTAAAGCTTTGGTT
GAAAACGAAGATCATCAATTAAATAGCGATGAAGCAGCAATGCGCGCGTTAATTAAGAAA
GTTGAAGACAATAAAGCTAAAATCATGATGGGACTGGCCTACTTAAATCAATATTATAGT
TTTAAATACGCTGAGTTATCAATTAAAGATATTATGATGTTTAAACCTGATTTTTATGGT
AAGAATGTTAATGTCTTAGATTTCTTAATCAAAATTGGTTCAAGTGAAAGAAATGTTAAA
GGTGATAGAACTTTAGAAGCTTATCGTGAAACTATCGGTGGAACAATTGGAATAAATGAA
TTAAATGGATTCTTACATTACAATATGAAGCTATTTACTAACCATACAGATATAAATGAC
TGGTTTAAGAAAGCTATTGAAAAGAATGCTTATGTAGTTGAACAACCATCAACGAACCCT
GCATTTGCCAACAAAAAATATCGTCTATACGAAGGAATTAATAATGGGCAACATGGGCGG
ATGATTTTACCTCTTCTTAACTTGAAAAATGCACATCTATTTATGATTTCAACATACAAC
ACTATCTCGTTTAGTTCGTTTGAAAAATATGGCAAAGACACAGATGAAAAACGTGAAAAG
TTTAAGAGTGAGATCAATAAACGTGCTAAAGAGCAGGTTAATTACTTAGATTTTTGGTCA
CGTCTTGCTACTGATAATGTCCGTGATAAACTTCTTAAGAGTCAAAATGTAGTTCCAACT
CCTGTATGGGATAATCATAATAGCCCGAACGGATGGGCTAGTAGACATGGTCATATAGAT
GGGAAACCGGATTATGCTCCAATTCGTGAGTTCTTTGGGCGAATCAATAAGTATCATGGT
TACAAATATGGATATGGCGCATATGCATATATTTTTGCAGCACCTCAACCGATGGATGCA
GTTTATTTCGTTATGACAGATTTAATTAGTGACTTTGGAACATCTGCATTTACACATGAA
ACTACTCACGTTAATGATCGTATGGCTTACTATGGTGGTCATTGGCATCGTGAAGGTACG
GATCTTGAAGCATTTGCTCAGGGGATGTTACAAACACCATCGGTATCAAATCCAAACGGA
GAATATGGCGCATTAGGTCTAAATATGGCGTATGAACGTCAAAATGATGGAAATCAATGG
TATAATCCAAATCCTAACAAACTTAAATCTCGCGCTGAAATTGATCACTACATGAAGAAC
TACAATGAAGCTCTTATGATGTTAGATTATCTGGAAGCAGAATCTGTTTTACCTAAATTA
AAAGGTAATAATGATAGATGGTTCAAGAAAATGGATAAACAAATGCGTAAGGACGGACAA
CCTCACCAGTTTGACAAAATTCGCGATTTAAATAATGAAGAGAAGAAAATTCAATTAGCT
TCTATTGAGGATTTAGTTGATAATAACTTTATGACTAAACACGGTGCTCCTGGAAATGGT
ACATATAACCCATCAGATTTTAGTTCAGCATATGTTAATATGAATATGATGACTGGTGTA
TACGGAGGTAACTCAAGTGATGGGGCTCCTGGCGCTGCTTCATTTAAACATAATACTTTC
CGTATGTGGGGATACTTCGGATACGAAAATGGATTCATCGGATATGCCTCTAATAAATAT
AAAGCCGAAGCCAATAAAGCAGGTCAAACTCTAAGTGATAAATATATCATCAATAAAGTT
TCTGGTGGTACATTTAATACACTTGAAGCGTGGAAGAAAGAATGGTTTAAACAAATCAAA
ACTAAAGCTCAAAAAGGATTCACAGCAATTGAAATTGATGGTAAAACTATTGATTCATAT
GAAAAATTAAAAGACTTATTTGATAAAGCTGTTGAAGAAGATCTTAAAGGAACTGGAACG
GATAAGACTGTGAAACTTAAAGAAAAAGTATACAAACAACTCCTTAAAAACACAGACGGC
TTCTCTGGTGATCTATTTACTGCACCACAAGCATAG60
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⊟Protein[edit | edit source]
⊟General[edit | edit source]
- locus tag: SPNA45_01005 [new locus tag: SPNA45_RS05645 ]
- symbol: ZmpB
- description: Zinc metalloprotease B (pseudogene)
- length:
- theoretical pI:
- theoretical MW:
- GRAVY:
⊟Function[edit | edit source]
- TIGRFAM:
- TheSEED: data available for D39, Hungary19A-6, TIGR4
- PFAM:
⊟Structure, modifications & cofactors[edit | edit source]
- domains:
- modifications:
- cofactors:
- effectors:
⊟Localization[edit | edit source]
- PSORTb:
- SignalP:
- predicted transmembrane helices (TMHMM):
⊟Accession numbers[edit | edit source]
- GI:
- RefSeq:
- UniProt:
⊟Protein sequence[edit | edit source]
⊟Experimental data[edit | edit source]
- protein localization:
- interaction partners:
⊟Expression & Regulation[edit | edit source]
⊟Operon[edit | edit source]
⊟Regulation[edit | edit source]
- regulator:
⊟Expression data[edit | edit source]
- PneumoExpress for strain D39V: SPV_0577 PneumoExpress
⊟Biological Material[edit | edit source]
⊟Mutants[edit | edit source]
⊟Expression vector[edit | edit source]
⊟lacZ fusion[edit | edit source]
⊟GFP fusion[edit | edit source]
⊟two-hybrid system[edit | edit source]
⊟FLAG-tag construct[edit | edit source]
⊟Antibody[edit | edit source]
⊟Other Information[edit | edit source]
You are kindly invited to share additional interesting facts.
⊟Literature[edit | edit source]
⊟References[edit | edit source]
⊟Relevant publications[edit | edit source]
Damiana Chiavolini, Guido Memmi, Tiziana Maggi, Francesco Iannelli, Gianni Pozzi, Marco R Oggioni
The three extra-cellular zinc metalloproteinases of Streptococcus pneumoniae have a different impact on virulence in mice.
BMC Microbiol: 2003, 3;14
[PubMed:12841855] [WorldCat.org] [DOI] (I e)C E Blue, G K Paterson, A R Kerr, M Bergé, J P Claverys, T J Mitchell
ZmpB, a novel virulence factor of Streptococcus pneumoniae that induces tumor necrosis factor alpha production in the respiratory tract.
Infect Immun: 2003, 71(9);4925-35
[PubMed:12933834] [WorldCat.org] [DOI] (P p)